Course detail
Methods for Analysis of Biological Systems
FCH-BC_MABSAcad. year: 2023/2024
The aim of the course is to present methods which are used in chemistry, biochemistry and biotechnology in order to separate, characterize, identify and quantify various biomolecules. The presented methods includes centrifugation, dialysis and ultrafiltration. Furthermore, the course will be focused also on chromatography (gel filtration, ion-exchange chromatography, HIC, affinity chromatography) and its utilization for isolation and purification of proteins and other biomolecules. Moreover, attention will be paid also to electrophoretic techniques used for characterization of proteins (PAGE, PAGE-SDS, Tricine-PAGE, native PAGE, 2D electrophoresis etc.) and DNA/RNA (horizontal electrophoresis, DGGE, TGGE etc.). The aim of the course will be also to explain principles of other methods for characterization of molecular mass of biopolymers such as SEC/MALS, ultracentrifugation, MALDI-TOF, DLS and others. In order to understand structure and function of biomolecules, the students will be familiarized with UV-VIS spectrometry, fluorescence spectroscopy, mass spectrometry, microfluidic techniques, flow cytometry and antibody-based assays . The course will also deals with application of optical, fluorescence and electron microscopy to study complex biological systems.
Language of instruction
Number of ECTS credits
Mode of study
Guarantor
Entry knowledge
Rules for evaluation and completion of the course
Exercises
Aims
The students attending the course will gain knowledge as well as practice with selected methods and techniques utilized for analysis of complex biological systems.
Study aids
Prerequisites and corequisites
Basic literature
Lodish H., Berk A., Matsudaira P., Kaiser C.A., Krieger M., Scott M.P., Zipursky L., Darnell J. : Molecular Cell Biology. W. H. Freeman and Company, New York 2001. (CS)
Štulík K. : Analytické separační metody. Nakladatelství Karolinum, Praha 2004. (CS)
Recommended reading
Elearning
Classification of course in study plans
- Programme BPCP_CHTPO Bachelor's
specialization BT , 3 year of study, winter semester, compulsory-optional
specialization CHPL , 3 year of study, winter semester, compulsory - Programme BKCP_CHTPO Bachelor's
specialization BT , 3 year of study, winter semester, compulsory-optional
specialization CHPL , 3 year of study, winter semester, compulsory - Programme BPCP_CHMA Bachelor's 3 year of study, winter semester, compulsory
Type of course unit
Lecture
Teacher / Lecturer
Syllabus
2. Single cell analysis - optical, fluorescent and electron microscopy
3. Single cell analysis – flow cytometry
4. Spectrophotometry, utilization of enzymes as analytical agents
5. Analytical use of luminescent methods in biological sciences
6. Introduction to separation methods – centrifugation, ultrafiltration, precipitation, extraction, dialysis
7. Chromatography for analysis of biomolecules
8. Isolation and purification of proteins
9. Electromigration methods for analysis of proteins and nucleic acids
10. Mass spectroscopy and its use for protein analysis
11. Imunochemistry and its analytical use
12. Selected methods of molecular biology
13. Biosensors
Elearning