Project detail
Methylation detection in Aneurinibacillus bacteria genome using nanopore sequencing
Duration: 01.03.2024 — 28.02.2025
Funding resources
Brno University of Technology - Vnitřní projekty VUT
- whole funder (2024-01-01 - 2025-12-31)
On the project
The submitted project aims to develop a robust methylation detection pipeline utilizing ONT sequencing for in-depth analysis of Aneurinibacillus sp. methylomes. It is centered on a comparative analysis of two sequencing techniques (ONT and PacBio) for methylation detection. This serves as foundational knowledge to create a new neural network aimed at enhancing the accuracy of ONT. This endeavor will provide us with novel insights into the role of methylomes in bacteria cultivated under stress conditions.
Mark
FCH/FEKT-J-24-8516
Default language
Czech
People responsible
Obruča Stanislav, prof. Ing., Ph.D. - fellow researcher
Řeháková Veronika, Ing. - fellow researcher
Sedlář Karel, doc. Mgr. Ing., Ph.D. - fellow researcher
Umair Mohammad - principal person responsible
Units
Faculty of Electrical Engineering and Communication
- beneficiary (2024-01-01 - 2024-12-31)
Department of Biomedical Engineering
- internal (2024-01-01 - 2024-12-31)
Faculty of Chemistry
- internal (2024-01-01 - 2024-12-31)
Institute of Food Science and Biotechnology
- internal (2024-01-01 - 2024-12-31)
Results
UMAIR, M.; ŘEHÁKOVÁ, V.; BEZDÍČEK, M.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. Study of Methylomes in Aneurinibacillus Species using Third Generation Sequencing Platform. 9th Meeting on Chemistry & Life, Book of Abstracts. 1. 2024. p. 55-55.
Detail
UMAIR, M.; ŘEHÁKOVÁ, V.; BUCHTÍKOVÁ, I.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Bioinformatics study of the third generation sequencing platforms applied on a thermophile. Proceedings I of the 30 th Conference STUDENT EEICT 2024. 1. 2024. ISBN: 978-80-214-6231-1.
Detail