Publication detail
Topological entropy calculations on the molecular sequences
SARKAR, A. SARKAR, B. ZMEŠKAL, O.
Original Title
Topological entropy calculations on the molecular sequences
Type
journal article in Scopus
Language
English
Original Abstract
We worked on the energy contained in the molecules arranged in genetic molecular sequence. The binding energy of the genetic alphabet, i.e., A, C, G, T have been taken from experimental data and they are used in the calculation of the entropy along the sequence. This is termed as topological entropy on the molecular sequence. The topological entropy of various species is used for principal component analysis, which is a tool to reduce the multidimensional data to less dimension for data visualization. Further the output of the analysis is used for the determination of dissimilarity between the sequences. The technique is verified using HEV molecular sequences.
Keywords
topological entropy, HEV molecular sequences, calculations
Authors
SARKAR, A.; SARKAR, B.; ZMEŠKAL, O.
Released
12. 9. 2023
Publisher
AIP publishing
ISBN
0094-243X
Periodical
AIP conference proceedings
Year of study
2894
Number
020017
State
United States of America
Pages from
020017-1
Pages to
020017-11
Pages count
11
URL